Information for 2-CTGTCYRWGGTSYTGW (Motif 2)

A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A
Reverse Opposite:
G C A T A G T C C G T A C T A G A T G C C G T A A G T C A G T C G C A T A G C T C T A G A C T G C G T A A T G C C G T A A C T G
p-value:1e-31
log p-value:-7.283e+01
Information Content per bp:1.827
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.71%
Number of Background Sequences with motif20.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.3 +/- 15.1bp
Average Position of motif in Background45.6 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.88
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCYRWGGTSYTGW-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----CTGTCYRWGGTSYTGW
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

MEIS2/MA0774.1/Jaspar

Match Rank:3
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCYRWGGTSYTGW
GCTGTCAA---------
 A C G T A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGTCYRWGGTSYTGW
GCTGTG-----------
 A C G T A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CTGTCYRWGGTSYTGW
CTGTTCCTGG------
 A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCYRWGGTSYTGW
CCTGTCAA---------
 A C G T A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGTCYRWGGTSYTGW
NTGTCAN---------
 A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:8
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CTGTCYRWGGTSYTGW---
---GCGGAGGTGTCGCCTC
 A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CTGTCYRWGGTSYTGW
CTGTCTGG--------
 A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------CTGTCYRWGGTSYTGW
AAGCACCTGTCAATAT------
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T A T C G A C G T A G T C A G T C T C G A C G T A C T A G A C T G A C G T T A C G A G T C A C G T A C T G C G T A
G C T A C T G A T C A G A T G C T C G A T A G C G T A C A G C T A C T G G A C T A G T C C T G A G T C A G C A T G C T A A G C T A C G T A C G T A C G T A C G T A C G T A C G T