Information for 7-GGTCATAAAA (Motif 13)

A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A
Reverse Opposite:
A G C T G C A T A G C T A C G T C G T A C A G T A T C G C G T A T A G C A G T C
p-value:1e-9
log p-value:-2.095e+01
Information Content per bp:1.732
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif2.71%
Number of Background Sequences with motif275.4
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets56.0 +/- 27.0bp
Average Position of motif in Background50.3 +/- 28.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0012.1_Cdx1/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAAA---
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

HOXC12/MA0906.1/Jaspar

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GGTCATAAAA-
GGTCGTAAAAA
 A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAAA---
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAAA---
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GGTCATAAAA--
GGTCGTAAAATT
 A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

HOXC11/MA0651.1/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GGTCATAAAA-
GGTCGTAAAAT
 A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.78
Offset:1
Orientation:forward strand
Alignment:GGTCATAAAA-
-GTCGTAAAAT
 A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAAA----
TTAGGTCGTAAAATTTC
 A C G T A C G T A C G T A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAAA----
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---GGTCATAAAA----
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T A C T G A T C G A C G T A T G C G T C A G C A T G T C A C T G A C G T A T C G A A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T