Information for 3-CACGTGRATCTSTGTT (Motif 6)

A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
Reverse Opposite:
G T C A C T G A A T G C G T C A A T C G C G T A T A C G G C T A A C G T A G T C A G T C C G T A A G T C A C T G A C G T A T C G
p-value:1e-13
log p-value:-3.200e+01
Information Content per bp:1.735
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.6 +/- 18.3bp
Average Position of motif in Background42.9 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:1
Score:0.67
Offset:-8
Orientation:forward strand
Alignment:--------CACGTGRATCTSTGTT
TGTCATTACACGTGGAAGGCGGT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
A G C T C T A G G A C T A T G C C T A G G A C T C A G T T G C A G T A C C T G A A G T C T C A G G A C T A C T G A C T G G T C A C T G A C T A G A T C G G T A C C T A G C T A G G C A T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CACGTGRATCTSTGTT
CACGTGBN--------
 A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
G T A C C T G A A G T C C T A G G C A T C A T G A C G T G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CACGTGRATCTSTGTT
CACGTG----------
 A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
A G T C C G T A A G T C A C T G A G C T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CACGTGRATCTSTGTT
GCACGTGA---------
 A C G T A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CACGTGRATCTSTGTT
ACACGTGC---------
 A C G T A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACGTGRATCTSTGTT
GHCACGTG----------
 A C G T A C G T A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
C T A G G C A T G A T C C G T A A G T C T C A G G A C T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CACGTGRATCTSTGTT
GNCACGTG----------
 A C G T A C G T A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MNT/MA0825.1/Jaspar

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACGTGRATCTSTGTT
ACCACGTGCC--------
 A C G T A C G T A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CACGTGRATCTSTGTT
GGTCACGTGA---------
 A C G T A C G T A C G T A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
T A C G T C A G A G C T A T G C C G T A A G T C T C A G A C G T A C T G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CACGTGRATCTSTGTT
NCCACGTG----------
 A C G T A C G T A T G C G T C A G T A C A C T G A C G T T A C G T C A G C G T A C A G T A T G C A C G T T A G C A C G T A T C G A G C T A C G T
T C G A T A G C T G A C C T G A A G T C A C T G G A C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T