Information for 4-CATGCTCAGTGCA (Motif 4)

A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A
Reverse Opposite:
C G A T A C T G A G T C C G T A A T G C C A G T C T A G C G T A A C T G A G T C G T C A A C G T A C T G
p-value:1e-14
log p-value:-3.418e+01
Information Content per bp:1.855
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.4 +/- 19.9bp
Average Position of motif in Background57.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATGCTCAGTGCA
GTCACGCTCNCTGA-
 A C G T A C G T A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CATGCTCAGTGCA-----
-AATCGCACTGCATTCCG
 A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CATGCTCAGTGCA
CCTGCTGAGH---
 A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CATGCTCAGTGCA
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CATGCTCAGTGCA
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CATGCTCAGTGCA
---GCTCCG----
 A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CATGCTCAGTGCA-
WYATGCATWATGCAT
 A C G T A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CATGCTCAGTGCA
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CATGCTCAGTGCA
--NGCTN------
 A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A
A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CATGCTCAGTGCA
GCGCATGCGCAG----
 A C G T A C G T A C G T A G T C G T C A A C G T A C T G A G T C A C G T A G T C G T C A A T C G C G A T C T A G A G T C C G T A
T C A G T G A C C T A G T A G C T G C A A C G T T A C G A G T C A C T G A G T C T C G A T A C G A C G T A C G T A C G T A C G T