Information for 3-ATGGCACCGTGAG (Motif 3)

C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G
Reverse Opposite:
A G T C A C G T A G T C C T G A A G T C A C T G A C T G A G C T A C T G A T G C A G T C C T G A C G A T
p-value:1e-14
log p-value:-3.418e+01
Information Content per bp:1.860
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.3 +/- 30.0bp
Average Position of motif in Background51.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0113.1_E2F3_2/Jaspar

Match Rank:1
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCACCGTGAG
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G
T A C G T A G C A C G T G A C T A C G T G C A T C T A G A T C G G T A C A C T G A T G C A G T C C T A G G C T A C T A G A T G C C A G T

PB0112.1_E2F2_2/Jaspar

Match Rank:2
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----ATGGCACCGTGAG
NNNNTTGGCGCCGANNN
 A C G T A C G T A C G T A C G T C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G
T A G C T G A C A G C T A G C T C A G T G A C T C T A G A T C G G T A C A C T G T A G C G A T C C T A G G C T A T C G A A T C G C A T G

PH0164.1_Six4/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----ATGGCACCGTGAG
ATAAATGACACCTATCA
 A C G T A C G T A C G T A C G T C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ATGGCACCGTGAG--
-TGGCACCATGCCAA
 C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G A C G T A C G T
A C G T A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ATGGCACCGTGAG
NTTGGCANN-----
 A C G T C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ATGGCACCGTGAG----
--NNNACCGAGAGTNNN
 C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:ATGGCACCGTGAG
ATGCCAACC----
 C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---ATGGCACCGTGAG
ACTATGCCAACCTACC
 A C G T A C G T A C G T C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-ATGGCACCGTGAG-
NAGGTCACNNTGACC
 A C G T C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G A C G T
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:ATGGCACCGTGAG----
-TGACCCAGTGACCTAC
 C G T A A G C T A C T G A T C G A G T C C T G A A G T C G T A C A C T G A G C T A C T G T G C A A C T G A C G T A C G T A C G T A C G T
A C G T G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C