Information for 20-RCATACATACABN (Motif 22)

T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G
Reverse Opposite:
A G T C T G C A A G C T A T C G A G C T T C G A A G C T T A C G A G C T T G C A A C G T T A C G A G C T
p-value:1e-5
log p-value:-1.279e+01
Information Content per bp:1.368
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.36%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.5 +/- 17.4bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0170.1_Sox17_2/Jaspar

Match Rank:1
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----RCATACATACABN
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-RCATACATACABN--
NNCATTCATTCATNNN
 A C G T T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G A C G T A C G T
T C G A G A C T G T A C C G T A A G C T G A C T T G A C C G T A C G A T G C A T A T G C C G T A C G A T G C T A A C T G C G A T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RCATACATACABN--
ATTTGCATACAATGG
 T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

PB0178.1_Sox8_2/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:RCATACATACABN-----
----ACATTCATGACACG
 T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RCATACATACABN---
CAAATCCAGACATCACA
 A C G T T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:RCATACATACABN-
----CCAGACRSVB
 T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0163.1_Six6_2/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RCATACATACABN-
ATGGGATATATCCGCCT
 A C G T A C G T A C G T T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G A C G T
T G C A C G A T A T C G T A C G A C T G T C G A G A C T C T G A A C G T G T C A A G C T G T A C A G T C T C A G G A T C G A T C C A G T

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:RCATACATACABN---
AGCGGCACACACGCAA
 T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

DMRT3/MA0610.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--RCATACATACABN
NTTGATACATT----
 A C G T A C G T T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

PH0082.1_Irx2/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:RCATACATACABN-------
---TAAATACATGTAAAATT
 T C G A A T G C T G C A A C G T T C G A A G T C T C G A A G C T T C G A T A G C T C G A A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T C G T A C G T A C T G A C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A C G T A C T G A C G T A A C G T G C A T