Information for 16-GCTCMCAGAAAGG (Motif 18)

A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A G C T A G C T A G T C C G A T A C T G A C T G A C T G C G T A A C T G A T G C
p-value:1e-7
log p-value:-1.784e+01
Information Content per bp:1.840
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.48%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.6 +/- 32.1bp
Average Position of motif in Background56.1 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

INSM1/MA0155.1/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTCMCAGAAAGG
CGCCCCCTGACA--
 A C G T A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GCTCMCAGAAAGG-----
----GGAGAAAGGTGCGA
 A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GCTCMCAGAAAGG
----CCAGACAG-
 A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:GCTCMCAGAAAGG-
----CCAGACRSVB
 A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G A C G T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GCTCMCAGAAAGG----
--TCCCAGMCRAGCCCC
 A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCTCMCAGAAAGG---
CAAATCCAGACATCACA
 A C G T A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GCTCMCAGAAAGG--
---CACAGCAGGGGG
 A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GCTCMCAGAAAGG---
AAACAGACAAAGGAAT
 A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G A C G T A C G T A C G T
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

GLIS3/MA0737.1/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCTCMCAGAAAGG
GACCCCCCACGAAG-
 A C G T A C G T A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G
A C T G T C G A A G T C A G T C G A T C A G T C G T A C A G T C C T G A A G T C C T A G C G T A G T C A A T C G A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GCTCMCAGAAAGG---
AGGTCACGGAGAGGTCA
 A C G T A T C G A G T C G A C T A G T C G T A C A G T C C G T A A C T G C T G A T C G A C G T A A C T G A C T G A C G T A C G T A C G T
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A