Information for 20-TGACCCTGCACTGCTC (Motif 29)

A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
Reverse Opposite:
C T A G C G T A T A C G A T G C C G T A A T C G G A C T C T A G A G T C C G T A C T A G A T C G A T C G A C G T A G T C C T G A
p-value:1e-8
log p-value:-2.007e+01
Information Content per bp:1.785
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.9 +/- 20.0bp
Average Position of motif in Background74.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCTGCACTGCTC
NNCNTGACCCCGCTCT----
 A C G T A C G T A C G T A C G T A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TGACCCTGCACTGCTC
GCTGACCTTGAACTN---
 A C G T A C G T A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----TGACCCTGCACTGCTC
NNNNTGACCCGGCGCG----
 A C G T A C G T A C G T A C G T A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G A C G T A C G T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGACCCTGCACTGCTC
NTGACCTTGA-------
 A C G T A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGACCCTGCACTGCTC
TGACCTTGACCT----
 A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGACCCTGCACTGCTC
ATGACCTTGA-------
 A C G T A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TGACCCTGCACTGCTC
NNNNATGACCTTGANTN----
 A C G T A C G T A C G T A C G T A C G T A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T A C G T A C G T A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGACCCTGCACTGCTC
BNTGDCCTTG--------
 A C G T A C G T A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGACCCTGCACTGCTC
TGACCT----------
 A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TGACCCTGCACTGCTC
NATGACCTTGA-------
 A C G T A C G T A G C T A C T G C G T A A T G C A T G C A G T C A C G T C T A G A G T C C T G A A T G C A C G T A T C G A T G C A C G T A G T C
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T