Information for 1-VCAGCTGSHD (Motif 1)

T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A
Reverse Opposite:
G A C T C T A G T A C G A G T C C G T A A T C G T A G C A C G T A C T G A T C G
p-value:1e-78
log p-value:-1.808e+02
Information Content per bp:1.671
Number of Target Sequences with motif313.0
Percentage of Target Sequences with motif36.78%
Number of Background Sequences with motif5549.7
Percentage of Background Sequences with motif11.76%
Average Position of motif in Targets51.6 +/- 22.1bp
Average Position of motif in Background50.2 +/- 33.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:forward strand
Alignment:VCAGCTGSHD
VCAGCTGBNN
 T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A
T G A C A T G C C G T A A T C G A T G C C A G T C A T G A C T G A G T C G T A C

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:2
Score:0.97
Offset:-2
Orientation:forward strand
Alignment:--VCAGCTGSHD
NNACAGCTGC--
 A C G T A C G T T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T

Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.96
Offset:0
Orientation:forward strand
Alignment:VCAGCTGSHD
ACAGCTGTTN
 T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A
T C G A A G T C C G T A A T C G T A G C A C G T A C T G A G C T A C G T A G T C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:4
Score:0.95
Offset:-3
Orientation:forward strand
Alignment:---VCAGCTGSHD
NNVVCAGCTGBN-
 A C G T A C G T A C G T T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.95
Offset:0
Orientation:forward strand
Alignment:VCAGCTGSHD
NCAGCTGCTG
 T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A
T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G

Myog/MA0500.1/Jaspar

Match Rank:6
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--VCAGCTGSHD
NNGCAGCTGTC-
 A C G T A C G T T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T

Myod1/MA0499.1/Jaspar

Match Rank:7
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-VCAGCTGSHD--
TGCAGCTGTCCCT
 A C G T T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A A C G T A C G T
G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

Tcf12/MA0521.1/Jaspar

Match Rank:8
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--VCAGCTGSHD
NNGCAGCTGTT-
 A C G T A C G T T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A
A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-VCAGCTGSHD-
AGCAGCTGCTNN
 A C G T T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A A C G T
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----VCAGCTGSHD---
CTCAGCAGCTGCTACTG
 A C G T A C G T A C G T A C G T T A G C A G T C G T C A A T C G A T G C C G A T A C T G A T G C G A T C C T G A A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G