Information for 6-CATAGTTKGAATC (Motif 6)

A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C
Reverse Opposite:
C T A G C G T A A C G T A G C T A G T C G T C A G T C A C G T A A G T C A G C T C G T A A C G T T C A G
p-value:1e-13
log p-value:-3.209e+01
Information Content per bp:1.853
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets64.4 +/- 27.2bp
Average Position of motif in Background51.7 +/- 22.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CATAGTTKGAATC
----ATTTGAATT
 A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PB0170.1_Sox17_2/Jaspar

Match Rank:2
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CATAGTTKGAATC-----
-NTTNTATGAATGTGNNC
 A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T G C T A G C A T A G C T C T A G A G C T T C G A A G C T A C T G G C T A C T G A C G A T T C A G C A G T C A T G T C A G C G A T A T G C

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CATAGTTKGAATC--
-----TTTGAAACCG
 A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CATAGTTKGAATC
CCATTGTTYB----
 A C G T A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C
A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CATAGTTKGAATC
NNNCCATTGTGTNAN--
 A C G T A C G T A C G T A C G T A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T

ZNF143/MA0088.2/Jaspar

Match Rank:6
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----CATAGTTKGAATC
CAATGCATTGTGGGTA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C
G A T C C T G A C T G A C A G T A C T G A G T C G C T A G A C T A G C T T C A G G A C T A C T G A C T G A C T G G C A T T C G A A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CATAGTTKGAATC
CCATTGTTC-----
 A C G T A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C
A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CATAGTTKGAATC-
CCATTGTATGCAAAT
 A C G T A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0178.1_Sox8_2/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CATAGTTKGAATC-
NNTNTCATGAATGT
 A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C A C G T
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T

PB0161.1_Rxra_2/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CATAGTTKGAATC
TCGCGAAGGTTGTACT
 A C G T A C G T A C G T A G T C C G T A A C G T C T G A C T A G A C G T C A G T A C G T A C T G C T G A C G T A A C G T A G T C
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T