Information for 5-GGGGATTTCCCAC (Motif 5)

C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
Reverse Opposite:
T A C G C G A T C A T G C T A G C T A G C T G A G T C A C G T A A C G T A G T C G A T C G T A C G A T C
p-value:1e-22
log p-value:-5.211e+01
Information Content per bp:1.634
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif6.60%
Number of Background Sequences with motif565.1
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets55.4 +/- 27.3bp
Average Position of motif in Background50.4 +/- 24.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.96
Offset:-1
Orientation:forward strand
Alignment:-GGGGATTTCCCAC
NGGGGATTTCCC--
 A C G T C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCCCAC
GGGGATTTCC---
 C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C A C G T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:3
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCCCAC
GGGAATTTCC---
 C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.89
Offset:0
Orientation:forward strand
Alignment:GGGGATTTCCCAC
GGGGATTTCC---
 C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GGGGATTTCCCAC
GGGAATTTCC---
 C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:6
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GGGGATTTCCCAC
AGGGGAATCCCCT-
 A C G T C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGGGATTTCCCAC
GGGGATTCCCCC-
 C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-GGGGATTTCCCAC
AGGGGATTCCCCT-
 A C G T C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GGGGATTTCCCAC-
----HTTTCCCASG
 C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C A C G T
A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

NFATC1/MA0624.1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GGGGATTTCCCAC
---ATTTTCCATT
 C T A G A C T G C T A G T C A G T G C A G C A T C A G T A G C T G A T C G A T C G T A C G C T A A T G C
A C G T A C G T A C G T C G T A G C A T C G A T G A C T G A C T T G A C G A T C C T G A G A C T G C A T