Information for 9-AAGCTTTGCA (Motif 20)

C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A
Reverse Opposite:
A G C T A T C G A G T C G T C A T G C A C G T A A C T G G T A C A C G T C G A T
p-value:1e-9
log p-value:-2.142e+01
Information Content per bp:1.826
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.44%
Number of Background Sequences with motif195.1
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets50.7 +/- 25.7bp
Average Position of motif in Background52.9 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-AAGCTTTGCA
CAAGCTT----
 A C G T C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A
G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AAGCTTTGCA---
---ATTTGCATAA
 C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A A C G T A G C T C G A T C T A G G T A C C G T A A G C T C G T A G C T A

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AAGCTTTGCA---
---ATTTGCATAT
 C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A A C G T A C G T A C G T
A C G T A C G T A C G T G C T A C G A T G A C T A C G T C T A G G A T C G T C A C G A T C G T A C A G T

POU2F2/MA0507.1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AAGCTTTGCA---
TTCATTTGCATAT
 C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A A C G T A C G T A C G T
G A C T C A G T G T A C G C T A A C G T G C A T A C G T C T A G A G T C G T C A A G C T C T G A G C A T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAGCTTTGCA--
--CCTTTGATGT
 C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A A C G T A C G T
A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:AAGCTTTGCA--
--NNTTGGCANN
 C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

POU5F1B/MA0792.1/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:AAGCTTTGCA--
---ATTTGCATA
 C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A A C G T A C G T
A C G T A C G T A C G T G C T A G C A T G C A T G C A T T C A G G T A C T C G A G C A T C T G A

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AAGCTTTGCA---
-GGGATTGCATNN
 C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A A C G T A C G T A C G T
A C G T T C A G A T C G A C T G C T G A A C G T A C G T C A T G G T A C C T G A A G C T A G T C A G C T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAGCTTTGCA
AAATCACTGC-
 A C G T C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A
T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:AAGCTTTGCA--
BTVATTWGCATA
 C G T A T G C A A C T G T G A C A C G T A C G T A C G T A C T G T A G C T C G A A C G T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A