Information for 14-CTCTTGAGGC (Motif 21)

A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C A C G T A G T C C G T A C G T A A C T G C G T A A C T G
p-value:1e-4
log p-value:-1.130e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif6.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets66.8 +/- 29.7bp
Average Position of motif in Background63.1 +/- 13.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTCTTGAGGC
NSCACTYVAV--
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTCTTGAGGC
RSCACTYRAG--
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCTTGAGGC
CCACTTGAA--
 A C G T A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTCTTGAGGC-
NGCCTGAGGCN
 A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

NKX2-3/MA0672.1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTCTTGAGGC
ACCACTTGAA--
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C
T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CTCTTGAGGC-
NGCCTNAGGCN
 A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T
G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTCTTGAGGC-
TGCCTGAGGCN
 A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CTCTTGAGGC--
ATAACCACTTGAAAATT
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTCTTGAGGC---
ATTGCCTGAGGCAAT
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T A C G T A C G T
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CTCTTGAGGC-
TGCCCTGAGGGCA
 A C G T A C G T A G T C A C G T A G T C A C G T A C G T A C T G C G T A A C T G A C T G A G T C A C G T
G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A