Information for 6-GCAATTCCCA (Motif 24)

A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A T C G C G T A C G T A A C G T A G C T A C T G A G T C
p-value:1e-8
log p-value:-1.899e+01
Information Content per bp:1.938
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif7.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.2 +/- 15.5bp
Average Position of motif in Background43.3 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-GCAATTCCCA
GGAAATTCCC-
 A C G T A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:GCAATTCCCA--
--HTTTCCCASG
 A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A A C G T A C G T
A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

GFY(?)/Promoter/Homer

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCAATTCCCA
ACTACAATTCCC-
 A C G T A C G T A C G T A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A
T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCAATTCCCA
AGATGCAATCCC--
 A C G T A C G T A C G T A C G T A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A
T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTCCCA
GGAAATTCCC-
 A C G T A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTCCCA-
GGGAAATCCCCN
 A C G T A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GCAATTCCCA-------
--ATTTCCCAGVAKSCY
 A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

PH0061.1_Hoxb6/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GCAATTCCCA---
NNNGTAATTACNNATA
 A C G T A C G T A C G T A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A A C G T A C G T A C G T
T C G A G T C A A T C G C A T G A G C T G T C A C G T A C G A T C A G T C T G A T G A C T A G C G T C A G C T A C G A T C G T A

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCAATTCCCA--
--ATTTTCCATT
 A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A A C G T A C G T
A C G T A C G T C G T A C G A T A C G T A C G T G C A T A G T C A G T C G C T A G A C T C G A T

MF0003.1_REL_class/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCAATTCCCA
GGAAATCCCC-
 A C G T A C T G A G T C C T G A C G T A A C G T A C G T A T G C A G T C A G T C C G T A
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T