Information for 5-CCATTGGCTGCWC (Motif 9)

A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C
Reverse Opposite:
C A T G G C A T A T C G T A G C C G T A A C T G A G T C G A T C G T C A C G T A A G C T C T A G C T A G
p-value:1e-12
log p-value:-2.803e+01
Information Content per bp:1.714
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.39%
Number of Background Sequences with motif136.4
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets53.0 +/- 24.8bp
Average Position of motif in Background50.2 +/- 31.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGGCTGCWC
CCGATTGGCT----
 A C G T A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:CCATTGGCTGCWC
TGATTGGCTANN-
 A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C
A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:CCATTGGCTGCWC
-----NGCTN---
 A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CCATTGGCTGCWC
---TTGGCA----
 A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CCATTGGCTGCWC
---TWGTCTGV--
 A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCATTGGCTGCWC
--NTTGGCANN--
 A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCATTGGCTGCWC-
CTGATTGGTCNATTT
 A C G T A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CCATTGGCTGCWC
------GCTCCG-
 A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCATTGGCTGCWC--
CCATTGTATGCAAAT
 A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C A C G T A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CCATTGGCTGCWC
CCGCCCAAGGGCAG---
 A C G T A C G T A C G T A C G T A G T C A G T C C T G A G C A T A C G T C T A G A C T G G T A C A C G T A T C G T A G C C G T A G A T C
A T G C G A T C T C A G G T A C G A T C G A T C C G T A G C T A C T A G C T A G C A T G A G T C C G T A C T A G A C G T A C G T A C G T