Information for 12-GCGTGTTGCA (Motif 48)

T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
Reverse Opposite:
A G C T A T C G T G A C C T G A C T G A T G A C T G C A A G T C C T A G A G T C
p-value:1e-6
log p-value:-1.393e+01
Information Content per bp:1.555
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif10.34%
Number of Background Sequences with motif2818.7
Percentage of Background Sequences with motif5.81%
Average Position of motif in Targets51.0 +/- 23.8bp
Average Position of motif in Background50.2 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCGTGTTGCA
TGCGTG-----
 A C G T T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:2
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---GCGTGTTGCA
NNCGCGTGNN---
 A C G T A C G T A C G T T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCGTGTTGCA
TTGCGTGCVA--
 A C G T A C G T T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCGTGTTGCA-
-NATGTTGCAA
 T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A A C G T
A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCGTGTTGCA
GGACGTGC----
 A C G T A C G T T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GCGTGTTGCA
TGGGTGTGGC-
 A C G T T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCGTGTTGCA
RTACGTGC----
 A C G T A C G T T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T

CLOCK/MA0819.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GCGTGTTGCA
AACACGTGTT---
 A C G T A C G T A C G T T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T A C G T

Arnt/MA0004.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCGTGTTGCA
CACGTG-----
 A C G T T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
G T A C C T G A A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCGTGTTGCA
NTGGGTGTGGCC
 A C G T A C G T T C A G G A T C C T A G A C G T A C T G G A C T G A C T A C T G T A G C T C G A
T G A C C G A T A C T G A C T G A C T G G A C T A C T G A C G T A C T G A C T G G A T C G A T C