Information for 22-AGCAGAGGSTGTTAAG (Motif 46)

C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
Reverse Opposite:
A G T C A C G T C G A T T C G A T C G A A G T C C G T A A T G C T A G C A G T C A G C T A G T C G C A T A C T G A G T C A C G T
p-value:1e-6
log p-value:-1.423e+01
Information Content per bp:1.729
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif10.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.0 +/- 11.7bp
Average Position of motif in Background42.1 +/- 27.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:1
Score:0.58
Offset:5
Orientation:forward strand
Alignment:AGCAGAGGSTGTTAAG
-----AAGGTGTKAA-
 C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
A C G T A C G T A C G T A C G T A C G T C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCAGAGGSTGTTAAG
CAGCC------------
 A C G T C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:3
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:AGCAGAGGSTGTTAAG
------AGGTGTTAAT
 C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---AGCAGAGGSTGTTAAG
CACAGCAGGGGG-------
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-AGCAGAGGSTGTTAAG
VAGRACAKNCTGTBC--
 A C G T C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C A C G T A C G T

TBX2/MA0688.1/Jaspar

Match Rank:6
Score:0.51
Offset:5
Orientation:forward strand
Alignment:AGCAGAGGSTGTTAAG
-----AAGGTGTGAAA
 C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
A C G T A C G T A C G T A C G T A C G T C G T A C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A C G T A C G T A

PB0013.1_Eomes_1/Jaspar

Match Rank:7
Score:0.50
Offset:2
Orientation:forward strand
Alignment:AGCAGAGGSTGTTAAG---
--GAAAAGGTGTGAAAATT
 C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

TBX20/MA0689.1/Jaspar

Match Rank:8
Score:0.48
Offset:5
Orientation:forward strand
Alignment:AGCAGAGGSTGTTAAG
-----TAGGTGTGAAG
 C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
A C G T A C G T A C G T A C G T A C G T C G A T C T G A T C A G A C T G A C G T A C T G C A G T C A T G C G T A C G T A T C A G

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.48
Offset:-3
Orientation:reverse strand
Alignment:---AGCAGAGGSTGTTAAG
CACAGCGGGGGGTC-----
 A C G T A C G T A C G T C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:10
Score:0.48
Offset:0
Orientation:reverse strand
Alignment:AGCAGAGGSTGTTAAG
AACAGATGGT------
 C G T A A C T G A G T C C G T A T A C G C T G A C T A G A T C G A T C G C G A T C T A G A C G T A G C T C G T A C G T A T A C G
T C G A T C G A A G T C C G T A A C T G G T C A G C A T A C T G A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T