Information for 25-GCACGCAACCCAA (Motif 45)

A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A T C G A C T G A C G T A C G T A C T G G T A C A C T G C G A T A C T G A G T C
p-value:1e-6
log p-value:-1.430e+01
Information Content per bp:1.933
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.5 +/- 22.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GCACGCAACCCAA
TBGCACGCAA-----
 A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCACGCAACCCAA
-CACGCA------
 A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GCACGCAACCCAA
CGAAGCACACAAAATA-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCACGCAACCCAA
AGCCACTCAAG----
 A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T

IRF8/MA0652.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GCACGCAACCCAA---
--TCGAAACCGAAACT
 A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A A C G T A C G T A C G T
A C G T A C G T G A C T G A T C C T A G G T C A C G T A C G T A T A G C G A T C A C T G C T G A C G T A G T C A A T G C G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCACGCAACCCAA
NSCACTYVAV----
 A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GCACGCAACCCAA
AGCGGCACACACGCAA-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T

IRF9/MA0653.1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GCACGCAACCCAA---
-AACGAAACCGAAACT
 A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A A C G T A C G T A C G T
A C G T G C T A G C T A G A T C C T A G T G C A C G T A G T C A T A G C G A T C C T A G G T C A G C T A C G T A T A G C G A C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCACGCAACCCAA
BGCACGTA------
 A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCACGCAACCCAA
AASCACTCAA-----
 A C G T A C G T A C T G A G T C C G T A A G T C A C T G A G T C C G T A C G T A A G T C A T G C A G T C C G T A C T G A
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T