Information for 5-GGAAATGCCC (Motif 30)

C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C
Reverse Opposite:
A C T G C A T G A T C G T A G C G C T A C G A T G A C T A G C T T G A C G A T C
p-value:1e-9
log p-value:-2.080e+01
Information Content per bp:1.652
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif8.22%
Number of Background Sequences with motif1691.8
Percentage of Background Sequences with motif3.49%
Average Position of motif in Targets50.6 +/- 29.9bp
Average Position of motif in Background50.1 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GGAAATGCCC
GGAAATTCCC
 C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

RELA/MA0107.1/Jaspar

Match Rank:2
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:GGAAATGCCC
GGAAATTCCC
 C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GGAAATGCCC
GGAAATCCCC
 C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C
C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.80
Offset:0
Orientation:reverse strand
Alignment:GGAAATGCCC
GGAAANCCCC
 C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:5
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-GGAAATGCCC-
GGGAAATCCCCN
 A C G T C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C A C G T
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GGAAATGCCC
NACAGGAAAT----
 A C G T A C G T A C G T A C G T C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGAAATGCCC
GGGGGAATCCCC
 A C G T A C G T C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

PB0133.1_Hic1_2/Jaspar

Match Rank:8
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGAAATGCCC------
GGGTGTGCCCAAAAGG
 C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C A C G T A C G T A C G T A C G T A C G T A C G T
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G

HIC2/MA0738.1/Jaspar

Match Rank:9
Score:0.67
Offset:4
Orientation:forward strand
Alignment:GGAAATGCCC---
----ATGCCCACC
 C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GGAAATGCCC-
AGGGGAATCCCCT
 A C G T A C G T C T A G A C T G T C G A C T G A G C T A C G A T A T C G T A G C G T A C T G A C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T