Information for 16-BCTTGACACCACT (Motif 29)

A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T C T A G A C T G A C G T A C T G A C G T A T G C G C T A C G T A A C T G T A C G
p-value:1e-9
log p-value:-2.091e+01
Information Content per bp:1.845
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.7 +/- 31.2bp
Average Position of motif in Background48.4 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0157.1_Rara_2/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-BCTTGACACCACT--
NNCNTGACCCCGCTCT
 A C G T A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T A C G T A C G T
A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

PH0164.1_Six4/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--BCTTGACACCACT--
ATAAATGACACCTATCA
 A C G T A C G T A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T A C G T A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.59
Offset:6
Orientation:reverse strand
Alignment:BCTTGACACCACT---
------MRSCACTYAA
 A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--BCTTGACACCACT--
TGTCGTGACCCCTTAAT
 A C G T A C G T A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T A C G T A C G T
C A G T A T C G G A C T A G T C C A T G A G C T T C A G G T C A G T A C G T A C A G T C A G T C C G A T G A C T T C G A G T C A A G C T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--BCTTGACACCACT--
NNANTTGACCCCTNNNN
 A C G T A C G T A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T A C G T A C G T
A C G T G T A C C G T A T C G A A C G T A C G T C T A G G T C A G T A C G T A C A G T C A G T C C A G T A C T G T C A G G T C A T A C G

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.56
Offset:7
Orientation:forward strand
Alignment:BCTTGACACCACT----
-------ACCACTTGAA
 A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:7
Score:0.56
Offset:7
Orientation:forward strand
Alignment:BCTTGACACCACT---
-------ACCACTTAA
 A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---BCTTGACACCACT
TGACCTTGACCT----
 A C G T A C G T A C G T A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--BCTTGACACCACT
CGTCTAGACA-----
 A C G T A C G T A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T A C G T A C G T

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:BCTTGACACCACT
-ACTGAAACCA--
 A G T C A G T C A C G T C G A T A T C G C G T A G T A C G T C A A G T C A G T C C G T A A G T C A C G T
A C G T G C T A T A G C A G C T A T C G G T C A C G T A G C T A A T G C G A T C C T G A A C G T A C G T