Information for 6-GGAGGGTTACTTT (Motif 12)

A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T
Reverse Opposite:
C G T A C T G A C G T A A C T G A C G T G T C A C G T A A G T C G T A C A G T C A C G T A T G C A G T C
p-value:1e-11
log p-value:-2.745e+01
Information Content per bp:1.936
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.3 +/- 30.6bp
Average Position of motif in Background72.4 +/- 13.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:GGAGGGTTACTTT-
-----TTGACTTTT
 A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGAGGGTTACTTT------
---GGGTTACTANAGGTCA
 A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

PB0167.1_Sox13_2/Jaspar

Match Rank:3
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GGAGGGTTACTTT
GTATTGGGTGGGTAATT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T
C T A G C G A T C T G A G A C T A G C T C A T G C A T G C T A G G C A T A C T G C A T G C A T G C G A T G C T A G C A T G C A T C A G T A C G T A C G T

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGAGGGTTACTTT
GGAGGGGGAA---
 A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T
A C T G C A G T G T C A A C T G A C T G A T C G A C T G C A T G C T G A C T G A A C G T A C G T A C G T

PB0153.1_Nr2f2_2/Jaspar

Match Rank:5
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGAGGGTTACTTT
CGCGCCGGGTCACGTA
 A C G T A C G T A C G T A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GGAGGGTTACTTT--
AGAGGGGATTAATTTAT
 A C G T A C G T A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:GGAGGGTTACTTT
---TGTTTACTTT
 A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GGAGGGTTACTTT
---TGTTTACTTT
 A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GGAGGGTTACTTT
-NGGGATTA----
 A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T
A C G T T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T A C G T

Nr1h3::Rxra/MA0494.1/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GGAGGGTTACTTT------
NNGAGGTTACTNNAGGTCA
 A C T G A T C G C G T A C T A G A C T G A C T G A C G T A C G T C G T A A G T C A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G A C G T C A T C A G T C G A C A T G C A T G A G C T G A C T G C T A G A T C G A C T G A C T A G C T T C G A C T A G C A T G C A G T A G T C T C G A