Information for 5-CTGAATTACTCAA (Motif 4)

A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A
Reverse Opposite:
A G C T C A G T C T A G C G T A C A T G A C G T G T C A G T C A A C G T G A C T A G T C C G T A C T A G
p-value:1e-13
log p-value:-3.015e+01
Information Content per bp:1.787
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif20.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets55.5 +/- 22.2bp
Average Position of motif in Background50.3 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTGAATTACTCAA
-TGAATTATGCAT
 A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A
A C G T C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T

MF0010.1_Homeobox_class/Jaspar

Match Rank:2
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CTGAATTACTCAA
---AATTATT---
 A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A
A C G T A C G T A C G T G C T A G C T A G A C T G A C T C G T A G C A T C G A T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTGAATTACTCAA
TCATGAATWATTCAT
 A C G T A C G T A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T

BATF::JUN/MA0462.1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTGAATTACTCAA
-GAAATGACTCA-
 A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A
A C G T C T A G C T G A C G T A G T C A A C G T A C T G C G T A T A G C A C G T T G A C C G T A A C G T

FOS::JUN/MA0099.2/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:forward strand
Alignment:CTGAATTACTCAA
-----TGACTCA-
 A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A
A C G T A C G T A C G T A C G T A C G T A G C T A C T G G T C A T G A C C G A T A T G C C G T A A C G T

PH0149.1_Pou3f4/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTGAATTACTCAA---
AATTAATTAATTAATTC
 A C G T A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A A C G T A C G T A C G T
C T G A T G C A G C A T C A G T G T C A G C T A C G A T C G A T G C T A C G T A C A G T C A G T G C T A C T G A C A G T C G A T A G T C

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CTGAATTACTCAA
ACTATGAATGAATGAT
 A C G T A C G T A C G T A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTGAATTACTCAA-
--NNATGASTCATH
 A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A A C G T
A C G T A C G T A C T G C T A G T C G A C G A T C A T G G C T A A T C G C G A T G T A C G C T A A G C T G T A C

FOSL2/MA0478.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTGAATTACTCAA
--GGATGACTCAT
 A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A
A C G T A C G T A C T G T C A G C T G A A C G T A C T G T C G A A T G C A C G T G T A C C G T A A C G T

Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CTGAATTACTCAA-
--GGATGACTCATC
 A G T C C G A T A C T G C T G A C G T A A C G T A C G T C G T A G A T C C G A T A G T C G C T A T C G A A C G T
A C G T A C G T C A T G C T A G T C G A A C G T A C T G C G T A T A G C C G A T T G A C C G T A A G C T G A T C