Information for 6-GTGGGAAAGCCCC (Motif 6)

A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C
Reverse Opposite:
C T A G C T A G A C T G A C T G G T A C A C G T A C G T A C G T A G T C G T A C A G T C C G T A A T G C
p-value:1e-18
log p-value:-4.231e+01
Information Content per bp:1.775
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif55.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets45.3 +/- 22.2bp
Average Position of motif in Background59.2 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:GTGGGAAAGCCCC-
--GGGAAATCCCCN
 A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.85
Offset:3
Orientation:reverse strand
Alignment:GTGGGAAAGCCCC
---GGAAATCCCC
 A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.84
Offset:3
Orientation:reverse strand
Alignment:GTGGGAAAGCCCC
---GGAAANCCCC
 A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.82
Offset:3
Orientation:reverse strand
Alignment:GTGGGAAAGCCCC
---GGAAATTCCC
 A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.76
Offset:3
Orientation:forward strand
Alignment:GTGGGAAAGCCCC
---GGAAATTCCC
 A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GTGGGAAAGCCCC
CSTGGGAAAD----
 A C G T A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GTGGGAAAGCCCC-
-AGGGGATTCCCCT
 A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C A C G T
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GTGGGAAAGCCCC
-GGGGGAATCCCC
 A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C

NFKB1/MA0105.4/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTGGGAAAGCCCC-
-AGGGGAATCCCCT
 A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C A C G T
A C G T T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GTGGGAAAGCCCC
GGCGGGAARN----
 A C G T A T C G G C A T C T A G A C T G C T A G C G T A G T C A C G T A C A T G T G A C A G T C A G T C G A T C
T A C G T A C G G T A C A T C G A C T G T A C G T C G A C T G A T C G A A T C G A C G T A C G T A C G T A C G T