Information for 14-CTCAAATVACCAA (Motif 17)

A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A C T G A C G T A G T C C G T A A G C T A C G T C G A T T A C G C G T A A T C G
p-value:1e-10
log p-value:-2.304e+01
Information Content per bp:1.783
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.42%
Number of Background Sequences with motif39.4
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets46.0 +/- 24.2bp
Average Position of motif in Background48.5 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0005.1_Forkhead_class/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CTCAAATVACCAA
---AAATAAACA-
 A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A
A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTCAAATVACCAA---
-AAAAATAACAAACGG
 A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A A C G T A C G T A C G T
A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

Foxj2/MA0614.1/Jaspar

Match Rank:3
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CTCAAATVACCAA
-----GTAAACAA
 A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T C T A G G C A T G T C A C G T A C G T A A G T C C G T A C G T A

FOXP2/MA0593.1/Jaspar

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CTCAAATVACCAA-
---AAGTAAACAAA
 A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A A C G T
A C G T A C G T A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CTCAAATVACCAA
TGACCTNTAGTAACCC-
 A C G T A C G T A C G T A C G T A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A
G A C T C T A G T G C A G T A C G A T C A G C T T A C G C A G T C T G A C T A G G C A T C T G A C T G A G T A C G T A C G A T C A C G T

Foxq1/MA0040.1/Jaspar

Match Rank:6
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CTCAAATVACCAA--
----AATAAACAATN
 A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C G T G C T A T G C A A G C T C G T A C G T A C G T A A G T C C G T A C G T A A G C T C G T A

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CTCAAATVACCAA---
----ACTAGCCAATCA
 A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Foxj3/MA0851.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCAAATVACCAA----
AAAAAGTAAACAAACAC
 A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0017.1_Foxj3_1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCAAATVACCAA----
AAAAAGTAAACAAACAC
 A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A A C G T A C G T A C G T A C G T
G C T A C T G A G T C A C G T A C T G A T C A G G A C T G T C A G C T A C G T A A G T C C G T A G C T A G C T A T A G C T G A C G T A C

PB0042.1_Mafk_1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTCAAATVACCAA-----
---AAGTCAGCANTTTTN
 A T G C G A C T A T G C C G T A C G T A T C G A A C G T T A C G C G T A A G T C A G T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G T A T C A G C G A T G T A C C G T A C A T G G T A C C T G A G C A T C G A T G C A T G C A T G C A T G C T A