Information for 12-GCCTCTAGAG (Motif 16)

T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G
Reverse Opposite:
A G T C A G C T A G T C A G C T C G T A A T C G C G T A A C T G C T A G A T G C
p-value:1e-10
log p-value:-2.478e+01
Information Content per bp:1.853
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif55.4
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets48.8 +/- 27.1bp
Average Position of motif in Background48.4 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCTCTAGAG
NSCACTYVAV
 T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GCCTCTAGAG-----
NGNTCTAGAACCNGV
 T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G A C G T A C G T A C G T A C G T A C G T
C T G A T C A G G C T A A G C T A G T C G A C T C T G A C T A G T G C A C T G A A G T C G T A C G A T C A C T G T C G A

PH0111.1_Nkx2-2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCCTCTAGAG----
ATAACCACTTGAAAATT
 A C G T A C G T A C G T T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G A C G T A C G T A C G T A C G T
G C A T C G A T T C G A C T G A T A G C A G T C G C T A G T A C C G A T A G C T T C A G C G T A T C G A C G T A C G T A A C G T C G A T

SMAD3/MA0795.1/Jaspar

Match Rank:4
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCTCTAGAG-
-CGTCTAGACA
 T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G A C G T
A C G T G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCCTCTAGAG
RSCACTYRAG
 T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCTCTAGAG-------
TGGCCACCAGGGGGCGCTA
 A C G T A C G T T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GCCTCTAGAG---
TAAGCCACTTGAAATT
 A C G T A C G T A C G T T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G A C G T A C G T A C G T
A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCTCTAGAG----------
GCCASCAGGGGGCGCYVNNG
 T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCTCTAGAG--------
TGGCCACCAGGTGGCACTNT
 A C G T A C G T T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCTCTAGAG-
NGTCCCNNGGGA
 A C G T T A C G A G T C A G T C G C A T A T G C A C G T C T G A A C T G C T G A A C T G A C G T
C T A G A T C G G A C T A G T C A G T C A G T C G A C T C T G A A C T G C T A G A C T G C T G A