Information for 11-AGAGGGCAAT (Motif 15)

C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T
Reverse Opposite:
G T C A A G C T A C G T C T A G A T G C A T G C A G T C A G C T A G T C G A C T
p-value:1e-10
log p-value:-2.503e+01
Information Content per bp:1.827
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif147.1
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets58.6 +/- 23.9bp
Average Position of motif in Background48.2 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAGGGCAAT
AGRGGTCA--
 C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAGGGCAAT
TRAGGTCA--
 C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCAAT
TNNGGGCAG-
 C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCAAT---
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCAAT---
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCAAT
NGTGGGCAT-
 C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCAAT
CAAAGGTCAG-
 A C G T C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCAAT--
CAAAGGTCAAGGG
 A C G T C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------AGAGGGCAAT
GTAGGGCAAAGGTCA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AGAGGGCAAT
TAGGGCAAAGGTCA--
 A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T A G T C G A A C T G A T C G T A C G G A T C C G T A T C G A C A G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T A C G T