Information for 4-TCTACCTAGCAAC (Motif 4)

A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C
Reverse Opposite:
C T A G C G A T A G C T C T A G A G T C A G C T T C G A A C T G C A T G A G C T C T G A C T A G T G C A
p-value:1e-24
log p-value:-5.713e+01
Information Content per bp:1.656
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.32%
Number of Background Sequences with motif94.7
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets63.2 +/- 21.5bp
Average Position of motif in Background50.6 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.82
Offset:1
Orientation:forward strand
Alignment:TCTACCTAGCAAC---
-CCGCATAGCAACGGA
 A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C A C G T A C G T A C G T
A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.82
Offset:3
Orientation:forward strand
Alignment:TCTACCTAGCAAC--
---SCCTAGCAACAG
 A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C A C G T A C G T
A C G T A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.81
Offset:1
Orientation:forward strand
Alignment:TCTACCTAGCAAC---
-TACCATAGCAACGGT
 A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C A C G T A C G T A C G T
A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:4
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---TCTACCTAGCAAC-------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:5
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TCTACCTAGCAAC-
TGTTKCCTAGCAACM
 A C G T A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C A C G T
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TCTACCTAGCAAC
GTTGCCATGGCAAC
 A C G T A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TCTACCTAGCAAC-
TTGCCATGGCAACN
 A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TCTACCTAGCAAC-
TTGCCATGGCAACC
 A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCTACCTAGCAAC
KGTTGCCATGGCAAC
 A C G T A C G T A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TCTACCTAGCAAC--
GTTGCCATGGCAACCG
 A C G T A C G T A G T C G A C T T C G A G T A C T G A C A G C T C T G A A C T G A G T C T C G A G C T A G A T C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G