Information for 4-CACTKCYCATTGGCYS (Motif 3)

A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C
Reverse Opposite:
T A C G C T G A C T A G A T G C G T A C C G T A C G T A C G A T T A C G T C G A T A C G T G A C C T G A T A C G G A C T T C A G
p-value:1e-34
log p-value:-8.041e+01
Information Content per bp:1.624
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.70%
Number of Background Sequences with motif133.0
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets52.9 +/- 23.4bp
Average Position of motif in Background49.4 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.85
Offset:5
Orientation:reverse strand
Alignment:CACTKCYCATTGGCYS
-----CCGATTGGCT-
 A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C
A C G T A C G T A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.78
Offset:6
Orientation:reverse strand
Alignment:CACTKCYCATTGGCYS--
------TGATTGGCTANN
 A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.78
Offset:5
Orientation:reverse strand
Alignment:CACTKCYCATTGGCYS----
-----CTGATTGGTCNATTT
 A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CACTKCYCATTGGCYS-
AGAGTGCTGATTGGTCCA
 A C G T A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.70
Offset:9
Orientation:forward strand
Alignment:CACTKCYCATTGGCYS
---------TTGGCA-
 A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.67
Offset:8
Orientation:reverse strand
Alignment:CACTKCYCATTGGCYS-
--------NTTGGCANN
 A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:CACTKCYCATTGGCYS-
-------NNTTGGCANN
 A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.61
Offset:6
Orientation:forward strand
Alignment:CACTKCYCATTGGCYS
------CCATTGTTTT
 A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.60
Offset:6
Orientation:forward strand
Alignment:CACTKCYCATTGGCYS
------CCWTTGTY--
 A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.59
Offset:5
Orientation:forward strand
Alignment:CACTKCYCATTGGCYS
-----CTCATTGTC--
 A G T C C T G A A T G C G A C T A C T G A T G C A G C T A T G C C G T A A C G T A C G T A C T G A T C G G A T C A G C T A T G C
A C G T A C G T A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T