Information for 9-AGAGGGCGCTGTT (Motif 10)

C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T
Reverse Opposite:
T G C A C T G A A G T C C G T A A C T G A G T C A C T G G T A C A T G C A G T C A G C T A T G C C G A T
p-value:1e-14
log p-value:-3.343e+01
Information Content per bp:1.772
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif48.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets38.5 +/- 19.0bp
Average Position of motif in Background51.7 +/- 34.5bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rhox11/MA0629.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGAGGGCGCTGTT------
--AAGACGCTGTAAAGCGA
 C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGAGGGCGCTGTT------
--AAGACGCTGTAAAGCGA
 C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGAGGGCGCTGTT------
--AGGACGCTGTAAAGGGA
 C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCGCTGTT-
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:AGAGGGCGCTGTT
------NGCTN--
 C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.60
Offset:-8
Orientation:forward strand
Alignment:--------AGAGGGCGCTGTT
TGGCCACCAGGGGGCGCTA--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.59
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGGCGCTGTT
TGGCCACCAGGTGGCACTNT-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.58
Offset:7
Orientation:forward strand
Alignment:AGAGGGCGCTGTT
-------GCTGTG
 C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G

PB0076.1_Sp4_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGGCGCTGTT
NNNAAGGGGGCGGGNNN
 A C G T A C G T A C G T A C G T C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C

E2F3/MA0469.2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--AGAGGGCGCTGTT---
AAAAATGGCGCCATTTTT
 A C G T A C G T C G T A A T C G C T G A A C T G A T C G A C T G G T A C A C T G A G T C A C G T T A C G G A C T A C G T A C G T A C G T A C G T
C T G A T C G A C G T A C G T A C G T A C A G T A T C G A T C G A G T C A T C G A G T C T A G C G T C A G C A T C G A T G C A T A G C T A G C T