Information for 3-GGGGGCAGTATTG (Motif 3)

A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
Reverse Opposite:
G A T C G T C A C G T A A G C T C G T A A G T C A C G T A C T G A G T C G T A C G A T C G A T C G T A C
p-value:1e-20
log p-value:-4.639e+01
Information Content per bp:1.766
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.55%
Number of Background Sequences with motif60.0
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets54.1 +/- 14.7bp
Average Position of motif in Background50.7 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THAP1/MA0597.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGGGGCAGTATTG
TNNGGGCAG-----
 A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGGGGCAGTATTG
NGTGGGCAT-----
 A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGGCAGTATTG
ANTGCGGGGGCGGN----
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A A C G T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGGCAGTATTG
NNNAAGGGGGCGGGNNN-
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
T A C G T C G A A T C G C T G A C T G A C T A G C A T G C T A G A T C G A C T G G A T C A C T G A C T G C A T G C T G A G A T C T G A C A C G T

POL003.1_GC-box/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGGGGCAGTATTG
AGGGGGCGGGGCTG
 A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
C G T A C T A G C A T G T C A G A C T G C T A G G T A C C T A G A C T G C T A G C A T G A G T C A G C T C A T G

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GGGGGCAGTATTG
TGTCAGGGGGCG------
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
C A G T A C T G A G C T G T A C C G T A A C T G A T C G A C T G A C T G A C T G G A T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGGGGCAGTATTG
AGRGGTCA------
 A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------GGGGGCAGTATTG
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.55
Offset:-9
Orientation:reverse strand
Alignment:---------GGGGGCAGTATTG
TGGCCACCAGGTGGCACTNT--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GGGGGCAGTATTG
CTCCAGGGGTCAATTGA-
 A C G T A C G T A C G T A C G T A C G T A C T G C A T G C T A G C A T G C T A G A G T C C G T A C T A G G A C T C T G A C G A T A C G T C A T G
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T