Information for 19-ACATGCATGTGTG (Motif 19)

C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G
Reverse Opposite:
A T G C C G T A A G T C C T G A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G C G A T
p-value:1e-7
log p-value:-1.683e+01
Information Content per bp:1.874
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.0 +/- 15.4bp
Average Position of motif in Background37.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-ACATGCATGTGTG-
GTCATGCHTGRCTGS
 A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G A C G T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--ACATGCATGTGTG-
NGTCACGCTTGGCTGC
 A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----ACATGCATGTGTG
NNTNTCATGAATGT---
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----ACATGCATGTGTG
GACCACATTCATACAAT
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G
T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACATGCATGTGTG--
CGTCACGCATGACTGCA
 A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

PAX1/MA0779.1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--ACATGCATGTGTG--
CGTCACGCATGACTGCA
 A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----ACATGCATGTGTG
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACATGCATGTGTG
GHATATKCAT-----
 A C G T A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G
C T A G G T A C C G T A G A C T C T G A C G A T C A T G G A T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ACATGCATGTGTG
TTCACGCATGAGTT
 A C G T C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ACATGCATGTGTG
-AAGGCAAGTGT-
 C G T A A G T C C G T A A C G T A C T G A G T C C G T A A C G T A C T G A G C T C T A G C G A T A T C G
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T