Information for 5-GTCACGCATG (Motif 5)

A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G
Reverse Opposite:
A T G C C T G A C A G T T C A G A G T C T C A G A C G T A T C G T C G A T A G C
p-value:1e-20
log p-value:-4.764e+01
Information Content per bp:1.635
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif8.61%
Number of Background Sequences with motif1043.2
Percentage of Background Sequences with motif2.24%
Average Position of motif in Targets50.2 +/- 24.6bp
Average Position of motif in Background49.6 +/- 34.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX1/MA0779.1/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-GTCACGCATG------
CGTCACGCATGACTGCA
 A C G T A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GTCACGCATG------
CGTCACGCATGACTGCA
 A C G T A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:3
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:GTCACGCATG
--CACGCA--
 A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G
A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:4
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GTCACGCATG
AGTCACGC---
 A C G T A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G
G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:5
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GTCACGCATG
TBGCACGCAA-
 A C G T A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GTCACGCATG-----
NGTCACGCTTGGCTGC
 A C G T A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G A C G T A C G T A C G T A C G T A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GTCACGCATG--
NNGGCCACGCCTTTN
 A C G T A C G T A C G T A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G A C G T A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GTCACGCATG----
GTCACGCTCNCTGA
 A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G A C G T A C G T A C G T A C G T
A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

Pax6/MA0069.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GTCACGCATG----
TTCACGCATGAGTT
 A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G A C G T A C G T A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:10
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GTCACGCATG
-GCACGTAY-
 A T C G A G C T T A G C C G T A A G T C T C A G A G T C G T C A G A C T T A C G
A C G T C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T