Information for 1-GCCGTAAAGC (Motif 1)

C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C
Reverse Opposite:
T C A G A G T C A G C T C G A T C A G T T C G A G T A C T A C G C T A G A G T C
p-value:1e-57
log p-value:-1.319e+02
Information Content per bp:1.703
Number of Target Sequences with motif42.0
Percentage of Target Sequences with motif28.19%
Number of Background Sequences with motif249.5
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets49.0 +/- 23.5bp
Average Position of motif in Background51.6 +/- 43.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAAGC--
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCCGTAAAGC-
NGYCATAAAWCH
 A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0066.1_Hoxc11/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAAGC--
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAAGC--
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GCCGTAAAGC
AGTCGTAAAAA
 A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

PH0077.1_Hoxd12/Jaspar

Match Rank:6
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAAGC---
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXC12/MA0906.1/Jaspar

Match Rank:7
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GCCGTAAAGC
GGTCGTAAAAA
 A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAAGC---
TTAGGTCGTAAAATTTC
 A C G T A C G T A C G T A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

HOXC11/MA0651.1/Jaspar

Match Rank:9
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-GCCGTAAAGC
GGTCGTAAAAT
 A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAAGC---
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T A C G T C T A G A G T C A T G C C A T G A G C T G T C A C G T A T C G A T C A G A G T C A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T