Information for 7-ASRAGGCASCMAG (Motif 20)

C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G
Reverse Opposite:
A T G C A C G T A C G T A C T G A T G C A C G T A T C G A T G C A G T C G A C T A G C T T A G C G A C T
p-value:1e-6
log p-value:-1.430e+01
Information Content per bp:1.573
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif3.88%
Number of Background Sequences with motif221.3
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets48.2 +/- 17.8bp
Average Position of motif in Background56.5 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ASRAGGCASCMAG
AGGTGNCAGACAG
 C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.58
Offset:0
Orientation:forward strand
Alignment:ASRAGGCASCMAG
AGGTGHCAGACA-
 C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ASRAGGCASCMAG
-TGAGTCAGCA--
 C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G
A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:forward strand
Alignment:ASRAGGCASCMAG
------CAGCC--
 C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:ASRAGGCASCMAG
-----BCAGACWA
 C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ASRAGGCASCMAG-
--GGACCACCCACG
 C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G A C G T
A C G T A C G T C T A G A T C G T C G A G T A C A G T C G C T A A T G C G T A C G A T C C G T A T A G C T C A G

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ASRAGGCASCMAG
AGGAAACAGCTG-
 C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ASRAGGCASCMAG--
ACTATGCCAACCTACC
 A C G T C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ASRAGGCASCMAG
--ATGCCAGACN-
 C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ASRAGGCASCMAG
ARNTGACA-----
 C T G A A T C G C T G A C G T A T C A G T A C G T A G C C G T A T A C G T G A C G T C A T G C A T A C G
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T