Information for 5-KMAGMACATAAYA (Motif 11)

A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A
Reverse Opposite:
A C G T C T G A A C G T A C G T C G T A A C G T A C T G A C G T A C T G A G T C A C G T A C G T G T C A
p-value:1e-7
log p-value:-1.739e+01
Information Content per bp:1.873
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.6 +/- 23.8bp
Average Position of motif in Background60.8 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-KMAGMACATAAYA--
CGAAGCACACAAAATA
 A C G T A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0121.1_Foxj3_2/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:KMAGMACATAAYA-----
-AACACCAAAACAAAGGA
 A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

ZNF410/MA0752.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-KMAGMACATAAYA---
TCCATCCCATAATACTC
 A C G T A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C

PH0112.1_Nkx2-3/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---KMAGMACATAAYA
CNTTAAGTACTTAANG
 A C G T A C G T A C G T A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A
G A T C C G T A G A C T A G C T C T G A C T G A A T C G A G C T C T G A A T G C G A C T G A C T C G T A T C G A T C G A C T A G

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:KMAGMACATAAYA
-AAGCACTTAA--
 A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A
A C G T T C G A T C G A T A C G G A T C G T C A G T A C C G A T A G C T G T C A T G C A A C G T A C G T

PH0117.1_Nkx3-1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---KMAGMACATAAYA-
TACTAAGTACTTAAATG
 A C G T A C G T A C G T A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

PB0123.1_Foxl1_2/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:KMAGMACATAAYA-----
--ATATCAAAACAAAACA
 A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

PB0119.1_Foxa2_2/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:KMAGMACATAAYA-----
---AAAAATAACAAACGG
 A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--KMAGMACATAAYA--
CATAACCACTTAACAAC
 A C G T A C G T A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A A C G T A C G T
T G A C G C T A C G A T T C G A G C T A T A G C A G T C C G T A G T A C A G C T A G C T G C T A C G T A T A G C T G C A G T C A G A T C

PB0096.1_Zfp187_1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---KMAGMACATAAYA
TTATTAGTACATAN--
 A C G T A C G T A C G T A C G T G T C A C G T A A C T G G T A C C G T A A G T C C G T A A C G T C G T A G T C A A G C T C G T A
C A G T C G A T C G T A G A C T C G A T T C G A C T A G G A C T G C T A A G T C C T G A A G C T C T G A T C G A A C G T A C G T