Information for 3-RAACTACAAYTCCCAG (Motif 3)

C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G
Reverse Opposite:
T G A C A G C T C A T G A C T G C T A G G T C A T C A G C G A T A G C T A C T G A G C T T C G A C T A G A G C T A G C T G A T C
p-value:1e-27
log p-value:-6.398e+01
Information Content per bp:1.655
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif4.91%
Number of Background Sequences with motif254.7
Percentage of Background Sequences with motif0.56%
Average Position of motif in Targets49.5 +/- 23.2bp
Average Position of motif in Background47.3 +/- 35.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.91
Offset:2
Orientation:forward strand
Alignment:RAACTACAAYTCCCAG
--ACTACAATTCCC--
 C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G
A C G T A C G T T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:2
Score:0.90
Offset:1
Orientation:forward strand
Alignment:RAACTACAAYTCCCAG-----
-RACTACAACTCCCAGVAKGC
 C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:3
Score:0.87
Offset:1
Orientation:forward strand
Alignment:RAACTACAAYTCCCAG-----
-AACTACAATTCCCAGAATGC
 C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:4
Score:0.61
Offset:7
Orientation:forward strand
Alignment:RAACTACAAYTCCCAG------
-------ATTTCCCAGVAKSCY
 C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.60
Offset:7
Orientation:forward strand
Alignment:RAACTACAAYTCCCAG-
-------HTTTCCCASG
 C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T A G C T C G A T A G T C G A T C A G T C C G T A A T G C T C A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.58
Offset:9
Orientation:reverse strand
Alignment:RAACTACAAYTCCCAG---
---------TGCCCAGNHW
 C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RAACTACAAYTCCCAG
NWAACCACADNN-----
 A C G T C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G
T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T A C G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RAACTACAAYTCCCAG
AAACCACANN------
 C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G
G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-RAACTACAAYTCCCAG
NAAACCACAG-------
 A C G T C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:RAACTACAAYTCCCAG
AAACCACAGC------
 C T A G T C G A C T G A A G T C A G C T C T G A G T A C T C G A G C T A A G T C C A G T A G T C G T A C G A T C C T G A A C T G
G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T A C G T