Information for 15-CTCATTAAAG (Motif 24)

A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G
Reverse Opposite:
A G T C C G A T A C G T C G A T C G T A C T G A A C G T A T C G C G T A C T A G
p-value:1e-7
log p-value:-1.728e+01
Information Content per bp:1.812
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.00%
Number of Background Sequences with motif370.5
Percentage of Background Sequences with motif0.79%
Average Position of motif in Targets44.2 +/- 26.1bp
Average Position of motif in Background49.4 +/- 31.9bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--CTCATTAAAG
AGCTCATTAT--
 A C G T A C G T A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G
C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:reverse strand
Alignment:-----CTCATTAAAG--
NNNACCTCATTATCNTN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G A C G T A C G T
C A T G G A T C G T C A C G T A T A C G G T A C A C G T G T A C C G T A C G A T C G A T C G T A C G A T A T G C A C T G C G A T A G T C

GSX2/MA0893.1/Jaspar

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTCATTAAAG
ACTAATTAAA-
 A C G T A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G
G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTCATTAAAG
NCYAATAAAA-
 A C G T A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

NKX6-1/MA0674.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CTCATTAAAG
GTAATTAA--
 A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G
T A C G A G C T G T C A G T C A A C G T G C A T T C G A G C T A A C G T A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----CTCATTAAAG--
AAAGCTCGTAAAATTT
 A C G T A C G T A C G T A C G T A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

PH0152.1_Pou6f1_2/Jaspar

Match Rank:7
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----CTCATTAAAG--
GCAACCTCATTATNNNN
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G A C G T A C G T
C A T G G T A C G T C A C G T A A T G C G T A C A C G T G T A C C G T A A C G T C G A T C G T A C G A T A T C G C G A T C A G T A G C T

GSX1/MA0892.1/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CTCATTAAAG
CCTAATTAAA-
 A C G T A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G
G T A C A T G C G A C T G T C A T C G A G C A T G A C T C G T A T C G A G C T A A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTCATTAAAG
CTAATTAA--
 A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G
A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:10
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTCATTAAAG
---ATTAAA-
 A G T C A C G T T A G C C G T A A G C T G C A T C G T A T G C A C G T A A C T G
A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T