Information for 5-GGGACTWCCC (Motif 5)

A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C
Reverse Opposite:
C T A G A C T G C T A G C G A T C G T A A T C G C A G T T A G C A G T C A G T C
p-value:1e-16
log p-value:-3.838e+01
Information Content per bp:1.784
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.45%
Number of Background Sequences with motif202.8
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets48.0 +/- 31.1bp
Average Position of motif in Background51.4 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GGGACTWCCC
NGGGGATTTCCC
 A C G T A C G T A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C

REL/MA0101.1/Jaspar

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GGGACTWCCC
GGGGATTTCC-
 A C G T A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C
A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GGGACTWCCC
GGGGATTTCC
 A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C
A T C G A C T G C A T G C T A G G C T A C G A T A G C T G A C T G A T C G T A C

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGGACTWCCC
GGGAATTTCC
 A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C
A T C G A C T G A C T G C T G A T C G A C G A T A C G T A G C T A G T C A G T C

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GGGACTWCCC
GGGAATTTCC
 A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C
A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGGACTWCCC-
GGGGATTCCCCC
 A C G T A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C A C G T
A C T G C T A G C A T G T C A G G C T A G A C T A G C T A G T C A G T C G A T C G A T C A G T C

NFKB2/MA0778.1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GGGACTWCCC-
AGGGGAATCCCCT
 A C G T A C G T A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C A C G T
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGGACTWCCC-
AGGGGAATCCCCT
 A C G T A C G T A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C A C G T
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

PB0058.1_Sfpi1_1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGGACTWCCC-----
-NNACTTCCTCTTNN
 A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T G C T A C T G A A T G C C G A T C G A T A G T C A G T C A C G T A G T C G C A T G C A T G C T A T C G A

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GGGACTWCCC--
--CACTTCCTCT
 A C T G A C T G A T C G G T C A A T G C A C G T G C T A A G T C A G T C A G T C A C G T A C G T
A C G T A C G T A T G C C T G A A T G C C G A T A C G T A G T C A G T C A G C T A T G C G C A T