Information for 9-CYCATTGGTT (Motif 20)

A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T
Reverse Opposite:
C T G A C T G A A G T C A G T C C G T A C T G A A C G T T C A G C T G A C T A G
p-value:1e-10
log p-value:-2.327e+01
Information Content per bp:1.792
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif4.04%
Number of Background Sequences with motif507.9
Percentage of Background Sequences with motif1.06%
Average Position of motif in Targets46.5 +/- 23.6bp
Average Position of motif in Background49.7 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:CYCATTGGTT
CCGATTGGCT
 A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:CYCATTGGTT-----
CTGATTGGTCNATTT
 A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T A C G T A C G T A C G T A C G T A C G T
A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:CYCATTGGTT---
-TGATTGGCTANN
 A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T A C G T A C G T A C G T
A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.82
Offset:-6
Orientation:forward strand
Alignment:------CYCATTGGTT--
AGAGTGCTGATTGGTCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T A C G T A C G T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A

PH0089.1_Isx/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CYCATTGGTT--
ACTCCTAATTAGTCGT
 A C G T A C G T A C G T A C G T A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T A C G T A C G T
G C T A T G A C A G C T T G A C G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C G T A G T C T A C G C G A T

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CYCATTGGTT---
GNNTTAATTGGTTGTT
 A C G T A C G T A C G T A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T A C G T A C G T A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T

PH0107.1_Msx2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CYCATTGGTT---
ANCGCTAATTGGTCTNN
 A C G T A C G T A C G T A C G T A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T A C G T A C G T A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CYCATTGGTT
-CCATTGTTC
 A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.68
Offset:4
Orientation:forward strand
Alignment:CYCATTGGTT
----TTGGCA
 A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

PH0006.1_Barhl2/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---CYCATTGGTT---
NNNTTAATTGGTTTTT
 A C G T A C G T A C G T A G T C A G C T A G T C G T C A A G C T A C G T A C T G A C T G A G C T A G C T A C G T A C G T A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T