Information for 2-TGGACAGCKCCCT (Motif 2)

A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
Reverse Opposite:
G C T A A T C G C T A G A T C G G T C A T A C G A G T C A C G T A C T G C G A T T A G C G A T C T G C A
p-value:1e-39
log p-value:-9.013e+01
Information Content per bp:1.688
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.47%
Number of Background Sequences with motif165.9
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets53.0 +/- 18.2bp
Average Position of motif in Background50.8 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:TGGACAGCKCCCT
--CACAGN-----
 A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:2
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TGGACAGCKCCCT
GATATTGACAGCTGCGT
 A C G T A C G T A C G T A C G T A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

PH0140.1_Pknox1/Jaspar

Match Rank:3
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCKCCCT
GGATTGACAGGTCNTT
 A C G T A C G T A C G T A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

PH0102.1_Meis1/Jaspar

Match Rank:4
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCKCCCT
NTATTGACAGCTNNTT
 A C G T A C G T A C G T A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGGACAGCKCCCT
TTGACAGC-----
 A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCKCCCT
NTATTGACAGGTNNTN
 A C G T A C G T A C G T A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

PH0141.1_Pknox2/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCKCCCT
NNATTGACAGGTGCTT
 A C G T A C G T A C G T A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T

PH0170.1_Tgif2/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCKCCCT
GTATTGACAGCTNNTT
 A C G T A C G T A C G T A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
A C T G A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C A T G T A G C G A C T T C G A T A C G G C A T C G A T

PH0105.1_Meis3/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TGGACAGCKCCCT
GTATTGACAGGTNNTT
 A C G T A C G T A C G T A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:10
Score:0.66
Offset:-9
Orientation:reverse strand
Alignment:---------TGGACAGCKCCCT
TCAGCACCATGGACAGCTCC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G A T C G G C T A A G T C T C G A A C T G A T G C C A G T T A G C A G T C T A G C C G A T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C A C G T A C G T