Information for 10-GGSAAHKCCCCAC (Motif 9)

A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C
Reverse Opposite:
A T C G G A C T A C T G A T C G A C T G A C T G G T C A C A G T C G A T A C G T A T C G A G T C A T G C
p-value:1e-11
log p-value:-2.677e+01
Information Content per bp:1.744
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif78.3
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets46.1 +/- 30.8bp
Average Position of motif in Background54.0 +/- 26.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GGSAAHKCCCCAC
GGGAAATCCCCN-
 A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C
C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GGSAAHKCCCCAC
-GGAAATCCCC--
 A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C
A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GGSAAHKCCCCAC
-GGAAANCCCC--
 A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C
A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GGSAAHKCCCCAC
AGGGGAATCCCCT-
 A C G T A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GGSAAHKCCCCAC
GGAAATTCCC---
 A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C
A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-GGSAAHKCCCCAC
GGGGGAATCCCC--
 A C G T A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GGSAAHKCCCCAC
AGGGGAATCCCCT-
 A C G T A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GGSAAHKCCCCAC
-GGAAATTCCC--
 A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C
A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGSAAHKCCCCAC---
GGGRAARRGRMCAGMTG
 A C G T A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C A C G T A C G T A C G T
C A T G A C T G C T A G T C G A T C G A T C G A T C G A T C A G T C A G T C A G T G A C T G A C C G T A A C T G T G C A C G A T A C T G

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGSAAHKCCCCAC--
AGGCTAATCCCCAANG
 A C G T A T C G A C T G A T G C C G T A C G T A G T C A A C G T G T A C G T A C A T G C A G T C C T G A A T G C A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G