Information for 6-AGAGGGCACT (Motif 3)

G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T
Reverse Opposite:
C T G A T A C G C G A T A T C G G T A C T G A C G T A C A C G T A T G C C G A T
p-value:1e-18
log p-value:-4.311e+01
Information Content per bp:1.536
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.76%
Number of Background Sequences with motif223.5
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets53.4 +/- 27.4bp
Average Position of motif in Background47.0 +/- 33.7bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGAGGGCACT
-AAGGTCAC-
 G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T
A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGAGGGCACT
TRAGGTCA--
 G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGAGGGCACT
CAAAGGTCAG-
 A C G T G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGAGGGCACT----
--RGGGCACTAACY
 G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C A T G C A T G T A C G G T A C T C G A A G T C C A G T C T G A C G T A A G T C G A C T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCACT
NGTGGGCAT-
 G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCACT--
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C G T G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.63
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGGCACT--
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGAGGGCACT
AGRGGTCA--
 G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCACT----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

PB0133.1_Hic1_2/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGGCACT---
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T G C T A T A C G T G C A C A T G A C T G C A T G T A G C G C T A A T G C G A C T A C G T A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C