Information for 5-GCCCTCTAGYGGC (Motif 4)

A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C
Reverse Opposite:
C A T G A G T C A G T C C T G A A T G C A G C T C G T A A C T G C G T A A C T G A C T G A C T G G T A C
p-value:1e-19
log p-value:-4.516e+01
Information Content per bp:1.859
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif4.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.2 +/- 25.4bp
Average Position of motif in Background54.1 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.84
Offset:-7
Orientation:forward strand
Alignment:-------GCCCTCTAGYGGC
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----GCCCTCTAGYGGC--
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----GCCCTCTAGYGGC--
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTCTAGYGGC
NTGCCCANNGGTNA-
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C
T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCCCTCTAGYGGC
NTGCCCTTGGGCGN-
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCCCTCTAGYGGC
GCCATCTGTT---
 A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GCCCTCTAGYGGC
GGTCCCGCCCCCTTCTC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GCCCTCTAGYGGC
NSCACTYVAV----
 A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCCCTCTAGYGGC
AGCCACTCAAG----
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GCCCTCTAGYGGC
CTGCCCGCA------
 A C G T A C G T A C T G A G T C A G T C A G T C A C G T A G T C A C G T C T G A A T C G A G C T A C T G A C T G G A T C
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T