Information for 3-TCWGGGAATCCCCTTT (Motif 4)

A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
Reverse Opposite:
C G T A C T G A C T G A A C T G A C T G A C T G T C A G C G T A A G C T A C G T G A T C A T G C G T A C G C A T A T C G C G T A
p-value:1e-16
log p-value:-3.754e+01
Information Content per bp:1.727
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.9 +/- 24.7bp
Average Position of motif in Background63.6 +/- 12.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0003.1_REL_class/Jaspar

Match Rank:1
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:TCWGGGAATCCCCTTT
---GGAAATCCCC---
 A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T A C G T

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:2
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:TCWGGGAATCCCCTTT
--GGGAAATCCCCN--
 A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:3
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TCWGGGAATCCCCTTT
-GGGGGAATCCCC---
 A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:4
Score:0.76
Offset:1
Orientation:forward strand
Alignment:TCWGGGAATCCCCTTT
-AGGGGATTCCCCT--
 A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:TCWGGGAATCCCCTTT
---GGAAATTCCC---
 A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:6
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TCWGGGAATCCCCTTT
-AGGGGATTCCCCT--
 A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:7
Score:0.73
Offset:3
Orientation:forward strand
Alignment:TCWGGGAATCCCCTTT
---GGAAATTCCC---
 A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TCWGGGAATCCCCTTT
---GGAAANCCCC---
 A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T

PH0121.1_Obox1/Jaspar

Match Rank:9
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCWGGGAATCCCCTTT-
NTAGTTAATCCCCTTAN
 A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T A C G T
C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TCWGGGAATCCCCTTT
GNNAGCTAATCCCCCN-
 A C G T A C G T A T G C C G T A A C T G A T C G C A T G C G T A T C G A G A C T A G T C A G T C A G T C A G T C A G C T A G C T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T A C G T