Information for 13-YCACGCWTTV (Motif 27)

A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G
Reverse Opposite:
A T G C T G C A G C T A C G A T C T A G A G T C A C T G C A G T A T C G T C G A
p-value:1e-9
log p-value:-2.194e+01
Information Content per bp:1.691
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.92%
Number of Background Sequences with motif438.9
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets54.5 +/- 26.9bp
Average Position of motif in Background52.5 +/- 34.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:YCACGCWTTV
-CACGCA---
 A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G
A C G T A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--YCACGCWTTV
TBGCACGCAA--
 A C G T A C G T A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----YCACGCWTTV-
NNGGCCACGCCTTTN
 A C G T A C G T A C G T A C G T A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G A C G T
G T A C C A G T C T A G C T A G T G A C G A T C T G C A T G A C A C T G T G A C T A G C A G C T G C A T G C A T T C A G

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:YCACGCWTTV
GCACGTAY--
 A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:5
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-YCACGCWTTV
GGCACGCGTC-
 A C G T A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:YCACGCWTTV
GCACGTNC--
 A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G
A T C G A G T C C G T A A G T C C T A G A G C T T G A C A T G C A C G T A C G T

Pax6/MA0069.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-YCACGCWTTV---
TTCACGCATGAGTT
 A C G T A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G A C G T A C G T A C G T
A C G T G A C T G A T C G T C A G A T C C A T G A T G C C G T A A G C T A T C G C T G A T A C G A G C T C A G T

PAX1/MA0779.1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--YCACGCWTTV-----
CGTCACGCATGACTGCA
 A C G T A C G T A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G A C G T A C G T A C G T A C G T A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PAX9/MA0781.1/Jaspar

Match Rank:9
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--YCACGCWTTV-----
CGTCACGCATGACTGCA
 A C G T A C G T A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G A C G T A C G T A C G T A C G T A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-YCACGCWTTV
BGCACGTA---
 A C G T A G C T A T G C G C T A G T A C A C T G A G T C G C T A C G A T A C G T T A C G
A T C G C A T G A G T C C T G A T A G C C T A G A G C T T G C A A C G T A C G T A C G T