Information for 3-CTGTTACGAG (Motif 4)

T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G
Reverse Opposite:
A T G C C G A T A T G C T A C G G C A T C T G A T C G A T G A C C T G A A T C G
p-value:1e-13
log p-value:-3.164e+01
Information Content per bp:1.662
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif5.75%
Number of Background Sequences with motif743.3
Percentage of Background Sequences with motif1.65%
Average Position of motif in Targets50.8 +/- 25.7bp
Average Position of motif in Background51.0 +/- 32.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CTGTTACGAG-
NTTTTACGAGN
 T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CTGTTACGAG----
ANATTTTACGAGNNNN
 A C G T A C G T T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G A C G T A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTGTTACGAG----
NAATTTTACGAGNTNN
 A C G T A C G T T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGTTACGAG--
CTGTTGCTAGGS
 T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G A C G T A C G T
A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTGTTACGAG
BRRCVGTTDN---
 A C G T A C G T A C G T T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G
A G C T C T A G C T A G A G T C T G C A A C T G A C G T C G A T C G T A T C A G A C G T A C G T A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGTTACGAG-
ANTTTTACGACC
 A C G T T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G A C G T
G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

PH0158.1_Rhox11_2/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CTGTTACGAG-
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:8
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CTGTTACGAG-
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CTGTTACGAG-
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGTTACGAG
GCTGTG-----
 A C G T T A G C G A C T A C T G A G C T G A C T C G T A A T G C T A C G G C T A T A C G
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T