Information for 1-CAGCGCCACCTGCCGG (Motif 3)

A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G
Reverse Opposite:
A G T C A G T C C T A G T A C G T A G C C G T A A C T G T A C G C A G T A C T G A C T G A G T C A C T G A T G C A G C T C T A G
p-value:1e-15
log p-value:-3.493e+01
Information Content per bp:1.787
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif32.4
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets53.2 +/- 27.9bp
Average Position of motif in Background50.0 +/- 28.6bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CAGCGCCACCTGCCGG-
CNNBRGCGCCCCCTGSTGGC
A C G T A C G T A C G T A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CAGCGCCACCTGCCGG---
TAGCGCCCCCTGGTGGCCA
A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAGCGCCACCTGCCGG---
ANAGTGCCACCTGGTGGCCA
A C G T A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CAGCGCCACCTGCCGG
----GCCATCTGTT--
A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CAGCGCCACCTGCCGG
---SNGCACCTGCHS-
A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G
A C G T A C G T A C G T T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAGCGCCACCTGCCGG
----GCCAGCTGBTNB
A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G
A C G T A C G T A C G T A C G T T C A G T A G C A G T C C G T A A C T G G T A C A C G T A C T G A T C G A G C T T G C A A G T C

PB0150.1_Mybl1_2/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CAGCGCCACCTGCCGG-
--CGACCAACTGCCGTG
A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G A C G T
A C G T A C G T A G T C A T C G T G C A G A T C G A T C G C T A G T C A A G T C A G C T A C T G G A T C G T A C C T A G G C A T A C T G

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CAGCGCCACCTGCCGG
----NNCACCTGNN--
A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G
A C G T A C G T A C G T A C G T A T G C T G C A A G T C C G T A A G T C A G T C A C G T A C T G A T G C G T C A A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CAGCGCCACCTGCCGG
----NVCAGCTGBBNN
A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G
A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C

PB0117.1_Eomes_2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CAGCGCCACCTGCCGG
NNGGCGACACCTCNNN-
A C G T A G T C T C G A A T C G A G T C C T A G A G T C A G T C G T C A A T G C A G T C A C G T A T C G A T G C G A T C A C T G T C A G
A T C G T C G A T C A G A T C G T G A C C T A G G C T A A G T C C T G A A T G C A G T C G A C T G A T C A G T C T A C G A G T C A C G T