Information for 1-CAGCGCCCYCTRGTGG (Motif 1)

A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G
Reverse Opposite:
A T G C A G T C G C T A T A G C G A T C T G C A A C T G C T A G A C T G C T A G C A T G T G A C C T A G A T G C A G C T T A C G
p-value:1e-181
log p-value:-4.190e+02
Information Content per bp:1.661
Number of Target Sequences with motif149.0
Percentage of Target Sequences with motif16.63%
Number of Background Sequences with motif202.8
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets53.7 +/- 19.8bp
Average Position of motif in Background46.5 +/- 26.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.97
Offset:-3
Orientation:forward strand
Alignment:---CAGCGCCCYCTRGTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:CAGCGCCCYCTRGTGG---
TAGCGCCCCCTGGTGGCCA
 A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-CAGCGCCCYCTRGTGG---
ANAGTGCCACCTGGTGGCCA
 A C G T A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0076.1_Sp4_1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CAGCGCCCYCTRGTGG
GGTCCCGCCCCCTTCTC-
 A C G T A C G T A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CAGCGCCCYCTRGTGG
----GCCATCTGTT--
 A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G
A C G T A C G T A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAGCGCCCYCTRGTGG--
---GGCCYCCTGCTGDGH
 A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G A C G T A C G T
A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:CAGCGCCCYCTRGTGG-
-----CCCCCTGCTGTG
 A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G A C G T
A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGCGCCCYCTRGTGG--
---GACCCCCCGCTGTGC
 A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G A C G T A C G T
A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0103.1_Zic3_1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAGCGCCCYCTRGTGG--
---CCCCCCCGGGGGGGT
 A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G A C G T A C G T
A C G T A C G T A C G T A T G C G T A C G T A C G T A C G T A C A T G C T A G C A C T G T A C G A C T G C A T G C A T G C A T G A T C G A G C T

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CAGCGCCCYCTRGTGG-
---CACCCCCGGGGGGG
 A G T C T C G A T A C G A G T C A C T G G T A C A G T C G T A C A G T C A G T C A C G T C T A G A T C G C G A T A C T G T A C G A C G T
A C G T A C G T A C G T A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G