Information for 6-ACAAAGTACACAA (Motif 5)

C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A
Reverse Opposite:
A C G T C G A T A T C G A C G T A C T G C G A T C G T A A G T C A G C T A C G T A C G T A T C G C G A T
p-value:1e-12
log p-value:-2.965e+01
Information Content per bp:1.811
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets53.8 +/- 19.4bp
Average Position of motif in Background51.0 +/- 21.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:1
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------ACAAAGTACACAA
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:2
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----ACAAAGTACACAA
AGAGTCCAAAGTCCA---
 A C G T A C G T A C G T A C G T A C G T C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

PB0015.1_Foxa2_1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ACAAAGTACACAA----
AAAAAGTAAACAAAGAC
 C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A A C G T A C G T A C G T A C G T
G C T A C G T A G C T A C G T A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A G C T A C G T A T A C G C T G A A G T C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:4
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ACAAAGTACACAA-
GGCAAAAGTCCAATAA
 A C G T A C G T C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PH0117.1_Nkx3-1/Jaspar

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-ACAAAGTACACAA---
TACTAAGTACTTAAATG
 A C G T C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A A C G T A C G T A C G T
C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:ACAAAGTACACAA
--AAAGTAAACA-
 C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ACAAAGTACACAA---
-CAAAGTAAACANNNN
 C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A A C G T A C G T A C G T
A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

PB0208.1_Zscan4_2/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ACAAAGTACACAA----
-CGAAGCACACAAAATA
 C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A A C G T A C G T A C G T A C G T
A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Foxa2/MA0047.2/Jaspar

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ACAAAGTACACAA
NCTAAGTAAACA-
 C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:forward strand
Alignment:ACAAAGTACACAA
--AAAGTAAACA-
 C G T A A T G C G T C A C G T A C T G A A C T G C G A T C G T A A G T C G T C A A T G C G C T A G T C A
A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T