Information for 19-CACGCGGGGCTCC (Motif 20)

A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C
Reverse Opposite:
C T A G A C T G G T C A C T A G A G T C A G T C A G T C A G T C A C T G G T A C A T C G A C G T A C T G
p-value:1e-8
log p-value:-1.901e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.6 +/- 28.1bp
Average Position of motif in Background45.8 +/- 17.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CACGCGGGGCTCC
CACGCA-------
 A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CACGCGGGGCTCC
GGCACGCGTC-----
 A C G T A C G T A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C
T A C G T A C G G A T C C T G A A G T C T C A G G A T C A C T G G A C T G T A C A C G T A C G T A C G T A C G T A C G T

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CACGCGGGGCTCC
CACGTGGN-----
 A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C
G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T A C G T A C G T A C G T A C G T A C G T

PB0052.1_Plagl1_1/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CACGCGGGGCTCC-----
--NNNGGGGCGCCCCCNN
 A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A

Mitf/MA0620.1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CACGCGGGGCTCC
GGTCACGTGG------
 A C G T A C G T A C G T A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C
C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G A C G T A C G T A C G T A C G T A C G T A C G T

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CACGCGGGGCTCC
NNCCACGTGG------
 A C G T A C G T A C G T A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C
T A C G T C G A T A G C A G T C C G T A A G T C C T A G G C A T A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Tcfl5/MA0632.1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CACGCGGGGCTCC
GGCACGTGCC-----
 A C G T A C G T A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C
C T A G A C T G G T A C C T G A A G T C T C A G G A C T C A T G T G A C G A T C A C G T A C G T A C G T A C G T A C G T

Mycn/MA0104.3/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CACGCGGGGCTCC
CACGTGGC-----
 A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C
A G T C C G T A A G T C A C T G A C G T A C T G A T C G G A T C A C G T A C G T A C G T A C G T A C G T

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CACGCGGGGCTCC
NNCCACGTGG------
 A C G T A C G T A C G T A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C
T C A G T C A G T A G C A G T C C T G A A G T C C T A G A C G T A C T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.55
Offset:8
Orientation:forward strand
Alignment:CACGCGGGGCTCC-
--------GCTCCG
 A G T C C G T A A T G C A C T G A G T C A C T G A C T G A C T G A C T G A G T C A C G T A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G